6VE0
Crystal structure of reduced SfmD by soaking with sodium hydrosulfite
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 59.453, 59.453, 159.965 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.010 - 3.150 |
R-factor | 0.265 |
Rwork | 0.260 |
R-free | 0.30770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vdp |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.200 |
High resolution limit [Å] | 3.150 | 8.540 | 3.150 |
Rmerge | 0.103 | 0.079 | 1.084 |
Rmeas | 0.109 | 0.084 | 1.153 |
Rpim | 0.036 | 0.028 | 0.389 |
Total number of observations | 57538 | ||
Number of reflections | 6152 | 362 | 295 |
<I/σ(I)> | 6.2 | ||
Completeness [%] | 99.9 | 99.5 | 100 |
Redundancy | 9.4 | 8.1 | 8.6 |
CC(1/2) | 0.994 | 0.744 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.1 M Tris pH 8.5, 0.2 M magnesium chloride, 30% PEG 4000 |