6VDZ
Crystal structure of reduced SfmD by soaking with sodium hydrosulfite
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 59.883, 59.883, 160.744 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.360 - 2.950 |
R-factor | 0.2663 |
Rwork | 0.260 |
R-free | 0.32540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vdp |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.950 | 8.000 | 2.950 |
Rmerge | 0.082 | 0.057 | 1.510 |
Rmeas | 0.088 | 0.061 | 1.606 |
Rpim | 0.030 | 0.021 | 0.534 |
Total number of observations | 58396 | ||
Number of reflections | 7467 | 442 | 372 |
<I/σ(I)> | 8.1 | ||
Completeness [%] | 99.0 | 99.1 | 99.5 |
Redundancy | 7.8 | 7.8 | 8 |
CC(1/2) | 0.997 | 0.919 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.1 M Tris pH 8.5, 0.2 M magnesium chloride, 30% PEG 4000 |