6VDP
Crystal structure of SfmD truncated variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 59.863, 59.863, 155.848 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.190 - 2.000 |
R-factor | 0.2004 |
Rwork | 0.196 |
R-free | 0.24360 |
Structure solution method | MAD |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | PHENIX (1.17.1-3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 4.310 | 2.000 |
Rmerge | 0.095 | 0.067 | 1.689 |
Rmeas | 0.098 | 0.069 | 1.739 |
Rpim | 0.022 | 0.016 | 0.409 |
Total number of observations | 433971 | ||
Number of reflections | 22661 | 2455 | 2202 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 99.9 | 99.8 | 99.9 |
Redundancy | 19.2 | 17.8 | 17.7 |
CC(1/2) | 0.998 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.1 M Tris-HCl pH 8.5, 0.2 M magnesium chloride, 20% PEG 8,000 |