6VDF
Structure of the periplasmic domain of YejM from Salmonella typhimurium (twinned)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 80 |
Detector technology | CMOS |
Collection date | 2016-06-06 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.001 |
Spacegroup name | P 1 |
Unit cell lengths | 42.948, 42.957, 181.209 |
Unit cell angles | 94.28, 94.02, 111.78 |
Refinement procedure
Resolution | 59.900 - 1.920 |
R-factor | 0.22 |
Rwork | 0.211 |
R-free | 0.26140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vat |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.900 | 1.989 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.091 | 0.762 |
Rpim | 0.758 | |
Number of reflections | 70265 | 5489 |
<I/σ(I)> | 7.3 | 1.07 |
Completeness [%] | 77.2 | 60.59 |
Redundancy | 1.6 | 1.4 |
CC(1/2) | 0.971 | 0.191 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 0.1 M HEPES pH 7.0, 9 % PEG3350 |