6VA0
Crystal structure of glucose-6-phosphate dehydrogenase W509A mutant in complex with catalytic NADP+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99999 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 157.364, 157.364, 113.566 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.620 - 3.100 |
R-factor | 0.2321 |
Rwork | 0.232 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6a08 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.802 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.620 | 47.620 | 3.290 |
High resolution limit [Å] | 3.100 | 9.150 | 3.100 |
Rmerge | 0.143 | 0.023 | 1.772 |
Rmeas | 0.145 | 0.023 | 1.793 |
Total number of observations | 1087829 | ||
Number of reflections | 25692 | 1147 | 4187 |
<I/σ(I)> | 34.75 | 161.69 | 2.59 |
Completeness [%] | 97.2 | 99 | 99.8 |
Redundancy | 42.341 | 35.745 | 44.627 |
CC(1/2) | 1.000 | 1.000 | 0.850 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | MES, PEG4000, Magnesium chloride, AG1 |