6V7L
The structure of the P212121 crystal form of canavalin at 173 K
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2018-06-15 |
Detector | DECTRIS PILATUS3 R CdTe 300K |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.889, 90.511, 183.739 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.800 |
R-factor | 0.1962 |
Rwork | 0.193 |
R-free | 0.25200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1cax |
RMSD bond length | 0.005 |
RMSD bond angle | 1.285 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.000 | 2.850 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.282 | |
Rmeas | 0.290 | |
Rpim | 0.070 | |
Number of reflections | 28813 | 2131 |
<I/σ(I)> | 9.9 | 0.4 |
Completeness [%] | 73.4 | 8.8 |
Redundancy | 17.2 | 2.3 |
CC(1/2) | 0.998 | 0.025 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Crystals were grown by sitting drop vapor diffusion from 18% PEG 3350 in 0.1 M HEPES reservoirs. The drops were equal amounts of a 40 mg/ml solution of precanavalin (not treated with any exogenous protease) in water. Crystals grew only after six to eight weeks at room temperature. |