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6V2G

Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp. Covalent acyl-enzyme intermediate and tetrahedral intermediate.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-05
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths62.097, 125.971, 76.376
Unit cell angles90.00, 96.70, 90.00
Refinement procedure
Resolution24.930 - 1.900
R-factor0.151
Rwork0.149
R-free0.20700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3eca monomer A
RMSD bond length0.019
RMSD bond angle2.285
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0253)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.930
High resolution limit [Å]1.9005.1501.900
Rmerge0.0440.0150.523
Rmeas0.0530.0170.658
Rpim0.0290.0090.393
Total number of observations289481
Number of reflections9010046883360
<I/σ(I)>13.7
Completeness [%]97.499.372.6
Redundancy3.23.62.3
CC(1/2)0.9990.484
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP52930.17 M sodium-citrate pH 6 and 18% (w/v) PEG3350, 5 mM L-Asp

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PDB entries from 2024-05-15

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