6V2F
Crystal structure of the HIV capsid hexamer bound to the small molecule long-acting inhibitor, GS-6207
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-10 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9762 |
Spacegroup name | P 3 |
Unit cell lengths | 158.301, 158.301, 55.648 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.920 - 2.000 |
R-factor | 0.2095 |
Rwork | 0.209 |
R-free | 0.25080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3h47 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.637 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.920 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.119 | 0.795 |
Rmeas | 0.132 | 0.905 |
Rpim | 0.058 | 0.427 |
Number of reflections | 105922 | 10274 |
<I/σ(I)> | 18.8 | 1.94 |
Completeness [%] | 98.7 | 90.82 |
Redundancy | 5.2 | 4.3 |
CC(1/2) | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 298 | 12% PEG 3350, 0.2 M sodium thiocyanate, 0.1 M sodium cacodylate, pH 6.7 |