6V1M
Structure of NDM-1 bound to QPX7728 at 1.05 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.400, 60.240, 42.060 |
Unit cell angles | 90.00, 98.46, 90.00 |
Refinement procedure
Resolution | 24.260 - 1.050 |
R-factor | 0.1418 |
Rwork | 0.141 |
R-free | 0.15780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tzf |
Data reduction software | iMOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.980 | 1.070 |
High resolution limit [Å] | 1.050 | 1.050 |
Rmerge | 0.052 | 0.283 |
Total number of observations | 14480 | |
Number of reflections | 94249 | 4572 |
<I/σ(I)> | 14.2 | 3.9 |
Completeness [%] | 99.1 | 96.6 |
Redundancy | 3.6 | 3.2 |
CC(1/2) | 0.997 | 0.921 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 50 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000 |