Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6V1M

Structure of NDM-1 bound to QPX7728 at 1.05 A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-11-12
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths41.400, 60.240, 42.060
Unit cell angles90.00, 98.46, 90.00
Refinement procedure
Resolution24.260 - 1.050
R-factor0.1418
Rwork0.141
R-free0.15780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4tzf
Data reduction softwareiMOSFLM (7.2.2)
Data scaling softwareAimless (0.7.3)
Phasing softwarePHASER (2.8.0)
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.9801.070
High resolution limit [Å]1.0501.050
Rmerge0.0520.283
Total number of observations14480
Number of reflections942494572
<I/σ(I)>14.23.9
Completeness [%]99.196.6
Redundancy3.63.2
CC(1/2)0.9970.921
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.1550 mM Potassium phosphate monobasic, 10 mM Calcium chloride, 25% (w/v) PEG8000

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon