6UXK
Structure of serine hydroxymethyltransferase 8 from Glycine max cultivar Forrest complexed with PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-08-23 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 56.120, 127.970, 128.030 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.696 - 2.100 |
R-factor | 0.1835 |
Rwork | 0.181 |
R-free | 0.22510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6uxh |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.700 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.100 | 2.828 |
Rmeas | 0.103 | 2.937 |
Rpim | 0.023 | 0.760 |
Total number of observations | 1094603 | 62685 |
Number of reflections | 54674 | 4402 |
<I/σ(I)> | 26.4 | 0.8 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 20 | 14.2 |
CC(1/2) | 1.000 | 0.392 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.21 M trimethylamine N-oxide, 0.1 M tris pH 8.5, 20% (w/v) PEG MME 2000 |