6UXH
Structure of serine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-03-15 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 55.640, 126.820, 128.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.070 - 1.858 |
R-factor | 0.2005 |
Rwork | 0.199 |
R-free | 0.23120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1cj0 |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.370 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.101 | 2.124 |
Rmeas | 0.106 | 2.306 |
Rpim | 0.030 | 0.888 |
Total number of observations | 957925 | 29349 |
Number of reflections | 78106 | 4367 |
<I/σ(I)> | 19.2 | 0.8 |
Completeness [%] | 99.6 | 99.7 |
Redundancy | 12.3 | 6.7 |
CC(1/2) | 0.999 | 0.636 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.175 M trimethylamine N-oxide, 0.1 M Tris (pH 8.5), 19.5% (w/v) PEG MME 2000 |