6UV4
Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 62.504, 62.504, 231.196 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.545 - 1.700 |
R-factor | 0.1738 |
Rwork | 0.172 |
R-free | 0.20400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | DDX17_rU10 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.730 |
High resolution limit [Å] | 1.690 | 1.700 |
Rmeas | 0.168 | 3.717 |
Number of reflections | 52488 | 2555 |
<I/σ(I)> | 36.1 | |
Completeness [%] | 99.9 | |
Redundancy | 22.9 | |
CC(1/2) | 0.996 | 0.550 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M sodium acetate pH 4.6, 0.1M sodium chloride, 14% MDP, 10 mM CaCl2 |