6UUE
The Se-Met Structure of the Vibrio vulnificus ToxR periplasmic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97934 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.960, 40.530, 49.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.780 - 1.389 |
R-factor | 0.2036 |
Rwork | 0.201 |
R-free | 0.22870 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.780 | 1.439 |
High resolution limit [Å] | 1.389 | 1.389 |
Rmerge | 0.063 | 1.182 |
Rmeas | 0.066 | 1.258 |
Rpim | 0.018 | 0.418 |
Number of reflections | 16768 | 1512 |
<I/σ(I)> | 21.66 | 1.2 |
Completeness [%] | 98.7 | |
Redundancy | 12.1 | |
CC(1/2) | 0.999 | 0.636 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 1.7 M Ammonium Sulfate, 0.1 M HEPES pH 7.5, 0.1 M Ammonium formate |