6UK4
Complex of T cell Receptor with HHAT Neoantigen Peptide KQWLVWLFL Presented by HLA-A206
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.310, 86.507, 238.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.470 - 2.700 |
R-factor | 0.2214 |
Rwork | 0.220 |
R-free | 0.25220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 1TVH 5jzi & 5C0B |
RMSD bond length | 0.004 |
RMSD bond angle | 0.739 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.740 |
High resolution limit [Å] | 2.690 | 2.690 |
Rmerge | 0.113 | 0.500 |
Rmeas | 0.121 | 0.539 |
Rpim | 0.042 | 0.195 |
Number of reflections | 35931 | 1672 |
<I/σ(I)> | 16 | 3.3 |
Completeness [%] | 99.0 | 94.3 |
Redundancy | 7.8 | 5.9 |
CC(1/2) | 0.980 | 0.908 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 277 | 0.1 M sodium citrate, pH 6.3, 7.5% PEG6000, 0.2 M lithium nitrate |