6UGG
Structure of unmodified E. coli tRNA(Asp)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-14 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0782 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 64.677, 64.677, 195.799 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.620 - 1.950 |
R-factor | 0.2164 |
Rwork | 0.215 |
R-free | 0.23810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ehz |
RMSD bond length | 0.003 |
RMSD bond angle | 0.850 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.620 | 2.056 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.155 | 2.683 |
Rmeas | 0.158 | 2.724 |
Rpim | 0.029 | 0.468 |
Number of reflections | 35638 | 55102 |
<I/σ(I)> | 15.8 | 1.8 |
Completeness [%] | 94.0 | 50.8 |
Redundancy | 30 | 33.7 |
CC(1/2) | 0.992 | 0.488 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 287 | 2 uL 20 mg/ml E. coli tRNA(Asp) + 2 uL equilibration solution (50 mM sodium cacodylate, pH 7.5, 30% MPD, 10 mM spermine tetrahydrochloride, 300 mM sodium chloride, 300 mM potassium chloride) + 0.5 uL 0.25% w/v p-coumaric acid, 0.25% w/v phenylurea, 0.25% w/v poly(3-hydroxybutyric acid), 0.25% w/v sulfaguanidine, 0.02 M sodium HEPES, pH 6.8 |