Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UGG

Structure of unmodified E. coli tRNA(Asp)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-14
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0782
Spacegroup nameP 31 2 1
Unit cell lengths64.677, 64.677, 195.799
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.620 - 1.950
R-factor0.2164
Rwork0.215
R-free0.23810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ehz
RMSD bond length0.003
RMSD bond angle0.850
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6202.056
High resolution limit [Å]1.9501.950
Rmerge0.1552.683
Rmeas0.1582.724
Rpim0.0290.468
Number of reflections3563855102
<I/σ(I)>15.81.8
Completeness [%]94.050.8
Redundancy3033.7
CC(1/2)0.9920.488
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52872 uL 20 mg/ml E. coli tRNA(Asp) + 2 uL equilibration solution (50 mM sodium cacodylate, pH 7.5, 30% MPD, 10 mM spermine tetrahydrochloride, 300 mM sodium chloride, 300 mM potassium chloride) + 0.5 uL 0.25% w/v p-coumaric acid, 0.25% w/v phenylurea, 0.25% w/v poly(3-hydroxybutyric acid), 0.25% w/v sulfaguanidine, 0.02 M sodium HEPES, pH 6.8

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon