6UFT
Crystal structure of BoNT/B receptor-binding domain in complex with VHH JLK-G12
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 153.240, 53.190, 114.410 |
Unit cell angles | 90.00, 92.35, 90.00 |
Refinement procedure
Resolution | 38.278 - 2.900 |
R-factor | 0.214808450038 |
Rwork | 0.212 |
R-free | 0.25754 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2nm1 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.697 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.280 | 3.080 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.120 | 0.611 |
Rpim | 0.120 | 0.610 |
Number of reflections | 20044 | 3260 |
<I/σ(I)> | 7.4 | |
Completeness [%] | 96.7 | |
Redundancy | 3.2 | |
CC(1/2) | 0.964 | 0.684 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M ammonium sulfate, 14 % PEG 8000, 0.1 M MES pH 6.0 |