6UFQ
Crystal structure of D678N GoxA bound to glycine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 109.141, 91.573, 178.409 |
Unit cell angles | 90.00, 91.53, 90.00 |
Refinement procedure
Resolution | 46.866 - 2.510 |
R-factor | 0.1785 |
Rwork | 0.176 |
R-free | 0.23090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6byw |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.100 | 47.100 | 2.550 |
High resolution limit [Å] | 2.510 | 13.750 | 2.510 |
Rmerge | 0.130 | 0.034 | 0.618 |
Rmeas | 0.152 | 0.040 | 0.723 |
Rpim | 0.078 | 0.020 | 0.372 |
Total number of observations | 443732 | 2447 | 21932 |
Number of reflections | 119962 | 701 | 5929 |
<I/σ(I)> | 8.9 | 23.4 | 2.2 |
Completeness [%] | 99.6 | 88.4 | 99.9 |
Redundancy | 3.7 | 3.5 | 3.7 |
CC(1/2) | 0.990 | 0.998 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 5.5 | 293 | Protein at 10 mg/mL was mixed in a 1:1 ratio with crystallization cocktail containing 21% w/v PEG 3350, 0.1 M sodium citrate pH 5.5 |