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6UDG

Crystal structure of a Probable thiol peroxidase from Elizabethkingia anophelis NUHP1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2017-11-24
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths53.590, 107.800, 113.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.700 - 2.650
R-factor0.2171
Rwork0.209
R-free0.28050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4je1A
RMSD bond length0.004
RMSD bond angle0.733
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.70048.7002.720
High resolution limit [Å]2.65011.8502.650
Rmerge0.0700.0340.618
Rmeas0.0780.0380.693
Total number of observations95601
Number of reflections197532581431
<I/σ(I)>14.1833.982.84
Completeness [%]99.795.699.8
Redundancy4.843.8724.983
CC(1/2)0.9980.9990.882
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290Anatrace Morpheus screen, well g8: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD: 20mM of each sodium formate, ammonium acetate, trisodium citrate, sodium potassium Ltartrate, sodium oxamate: 100mM MOPS/HEPES-Na pH 7.5: ElanA.00055.a.B1, PW38308, at 23mg/ml: cryo: direct: tray 294018 g8: puck xoe2-6.

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