6UBR
Crystal structure of D678A GoxA bound to glycine at pH 7.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-30 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 110.679, 93.348, 187.853 |
Unit cell angles | 90.00, 94.95, 90.00 |
Refinement procedure
Resolution | 48.288 - 1.960 |
R-factor | 0.1755 |
Rwork | 0.175 |
R-free | 0.20940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6byw |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.290 | 48.290 | 1.990 |
High resolution limit [Å] | 1.960 | 10.740 | 1.960 |
Rmerge | 0.069 | 0.023 | 0.482 |
Rmeas | 0.081 | 0.027 | 0.574 |
Rpim | 0.042 | 0.013 | 0.306 |
Total number of observations | 951567 | 6272 | 44639 |
Number of reflections | 271688 | 1722 | 13478 |
<I/σ(I)> | 11.5 | 34.3 | 2.2 |
Completeness [%] | 99.5 | 96.4 | 99.8 |
Redundancy | 3.5 | 3.6 | 3.3 |
CC(1/2) | 0.998 | 0.999 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.5 | 293 | Protein at 10 mg/mL was combined in a 1:1 ratio with a solution containing 21% PEG 3350, 0.1 M ammonium sulfate, 0.1 M HEPES pH 7.5 |