6UBN
Crystal structure of D678E GoxA bound to glycine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 110.239, 92.132, 178.443 |
Unit cell angles | 90.00, 91.16, 90.00 |
Refinement procedure
Resolution | 47.312 - 2.150 |
R-factor | 0.1723 |
Rwork | 0.170 |
R-free | 0.22150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6byw |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.312 | 47.310 | 2.190 |
High resolution limit [Å] | 2.150 | 11.780 | 2.150 |
Rmerge | 0.133 | 0.052 | 0.415 |
Rmeas | 0.157 | 0.060 | 0.499 |
Rpim | 0.081 | 0.029 | 0.272 |
Total number of observations | 4778 | 25609 | |
Number of reflections | 186019 | 1229 | 8684 |
<I/σ(I)> | 5.5 | 11.8 | 2 |
Completeness [%] | 95.8 | 96.4 | 90.8 |
Redundancy | 3.4 | 3.9 | 2.9 |
CC(1/2) | 0.985 | 0.996 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 5.5 | 293 | Protein at 10 mg/mL was mixed in a 1:1 ratio with 21% PEG 3350, 0.1 M citrate pH 5.5 |