6U8U
RNA duplex bound with TNA 3'-3' imidazolium dimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 99 |
Detector technology | CCD |
Collection date | 2018-06-15 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 1 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 43.956, 43.956, 84.516 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 2.400 |
R-factor | 0.218 |
Rwork | 0.216 |
R-free | 0.26700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c8d |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.059 | 0.709 |
Rmeas | 0.060 | 0.745 |
Rpim | 0.020 | 0.228 |
Number of reflections | 4009 | 387 |
<I/σ(I)> | 37.2 | 3.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 10.2 | 10.6 |
CC(1/2) | 1.000 | 0.958 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 10 % w/v Polyethylene glycol 6,000, 50 mM HEPES; pH 7.0, 200 mM Ammonium acetate, 150 mM Magnesium acetate |