6U75
Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-13 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.916, 80.689, 76.527 |
Unit cell angles | 90.00, 95.00, 90.00 |
Refinement procedure
Resolution | 49.000 - 2.630 |
R-factor | 0.2201 |
Rwork | 0.218 |
R-free | 0.26270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3i2d |
RMSD bond length | 0.002 |
RMSD bond angle | 0.483 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.000 | 2.730 |
High resolution limit [Å] | 2.630 | 2.630 |
Rmerge | 0.090 | 0.483 |
Rmeas | 0.107 | 0.581 |
Rpim | 0.057 | 0.316 |
Number of reflections | 21200 | 5431 |
<I/σ(I)> | 11.15 | 1.69 |
Completeness [%] | 94.5 | 86.9 |
Redundancy | 3.1 | 2.8 |
CC(1/2) | 0.995 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 291 | 20 mM Tris-HCl pH8 100 mM NaCl 20% glycerol 1 mM beta-mercaptoethanol 40 % PEG3350 |