6U1Q
Crystal Structure of VpsO (VC0937) Kinase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1 |
Spacegroup name | P 64 |
Unit cell lengths | 171.430, 171.430, 44.390 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.858 - 2.870 |
R-factor | 0.1775 |
Rwork | 0.175 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jlv |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.390 | 3.030 |
High resolution limit [Å] | 2.870 | 2.870 |
Rmerge | 0.096 | 0.660 |
Number of reflections | 17506 | 2518 |
<I/σ(I)> | 9.2 | 2.5 |
Completeness [%] | 100.0 | |
Redundancy | 4.6 | |
CC(1/2) | 0.990 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.2 M sodium thiocyanate, pH 6.9, 20% PEG 3350 |