6TZZ
Crystal Structure of Tetrahymena Thermophila Lipin Phosphatidic Acid Phosphatase with Magnesium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.91839 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 165.410, 57.644, 84.191 |
Unit cell angles | 90.00, 114.90, 90.00 |
Refinement procedure
Resolution | 47.492 - 3.000 |
R-factor | 0.2447 |
Rwork | 0.242 |
R-free | 0.28750 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | DIALS |
Data scaling software | Aimless (0.6.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.520 | 47.520 | 2.650 |
High resolution limit [Å] | 2.580 | 11.540 | 2.580 |
Rmerge | 0.250 | 0.147 | 1.247 |
Rmeas | 0.270 | 0.159 | 1.347 |
Rpim | 0.102 | 0.059 | 0.505 |
Total number of observations | 158812 | 1898 | 12122 |
Number of reflections | 23065 | 283 | 1713 |
<I/σ(I)> | 4.4 | 10.9 | 1.5 |
Completeness [%] | 100.0 | 98.8 | 100 |
Redundancy | 6.9 | 6.7 | 7.1 |
CC(1/2) | 0.985 | 0.982 | 0.411 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.2 M Mg(NO3)2, 10% PEG 3350 |