6TSS
Crystal structure of horse L ferritin (HoLf) Fe(III)-loaded for 60 minutes
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-26 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97950 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 181.281, 181.281, 181.281 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 104.660 - 2.180 |
Rwork | 0.197 |
R-free | 0.25670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lg2 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.764 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 104.660 | 2.610 | 2.300 |
High resolution limit [Å] | 2.180 | 2.480 | 2.180 |
Rmerge | 0.084 | 1.377 | 1.092 |
Rmeas | 0.089 | 1.449 | 1.138 |
Rpim | 0.019 | 0.337 | 0.241 |
Number of reflections | 13865 | 1364 | 1952 |
<I/σ(I)> | 21.8 | 2.1 | 3.3 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.6 | 20.1 | 22 |
CC(1/2) | 1.000 | 0.788 | 0.863 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 30 mM cadmium nitrate, 1 M ammonium sulfate, 200 mM sodium acetate, pH 5.5 |