6TSI
cd1 nitrite reductase NirS with bound dihydro-heme d1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.738900 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 163.762, 91.093, 112.706 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 79.610 - 2.380 |
R-factor | 0.24 |
Rwork | 0.238 |
R-free | 0.27950 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1nir |
RMSD bond length | 0.010 |
RMSD bond angle | 1.370 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18rc1-3769) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 112.710 | 2.620 |
High resolution limit [Å] | 2.380 | 2.380 |
Rpim | 0.110 | 0.540 |
Number of reflections | 50095 | 2505 |
<I/σ(I)> | 6.6 | 1.6 |
Completeness [%] | 92.6 | 44.5 |
Redundancy | 12.5 | 9.6 |
CC(1/2) | 0.990 | 0.640 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 1.9M K2HPO4 0.1M Tris-HCl pH 8 |