6TO1
Crystal structure of three N-terminal domains of the type V pili tip protein Mfa5 from Porphyromonas gingivalis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 290 |
Detector technology | PIXEL |
Collection date | 2016-09-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9756 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.720, 72.810, 184.490 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.980 - 1.800 |
R-factor | 0.1629 |
Rwork | 0.161 |
R-free | 0.19980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6tnj |
RMSD bond length | 0.011 |
RMSD bond angle | 0.985 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3228) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.980 | 1.863 |
High resolution limit [Å] | 1.799 | 1.799 |
Rmerge | 0.097 | 1.126 |
Rmeas | 0.101 | 1.180 |
Rpim | 0.028 | 0.344 |
Number of reflections | 64113 | 6117 |
<I/σ(I)> | 19.66 | 1.87 |
Completeness [%] | 99.5 | 95.94 |
Redundancy | 13.1 | 11.1 |
CC(1/2) | 0.999 | 0.646 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 17% PEG3350, 80mM NaPO4 pH6, 3mM CaCL and 3mM MgCL |