6TJE
Crystal structure of the computationally designed Cake5 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.621, 66.727, 85.993 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.720 - 3.150 |
R-factor | 0.2382 |
Rwork | 0.237 |
R-free | 0.26140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Cake9 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.866 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.720 | 3.370 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.115 | 0.739 |
Rmeas | 0.119 | 0.769 |
Rpim | 0.033 | 0.211 |
Number of reflections | 12312 | 3074 |
<I/σ(I)> | 11.3 | 2.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.8 | |
CC(1/2) | 0.998 | 0.961 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.2M Sodium chloride, 20% PEG3350 |