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6TJD

Crystal structure of the computationally designed Cake4 protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-18
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths34.913, 65.758, 71.205
Unit cell angles90.00, 91.05, 90.00
Refinement procedure
Resolution35.600 - 2.100
R-factor0.1786
Rwork0.176
R-free0.21930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Cake8 model
RMSD bond length0.002
RMSD bond angle0.443
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.3102.160
High resolution limit [Å]2.1002.100
Rmerge0.0660.461
Rmeas0.0710.497
Rpim0.0270.186
Number of reflections189441561
<I/σ(I)>1.13.5
Completeness [%]100.099.9
Redundancy6.87
CC(1/2)0.9530.953
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293.150.18M Magnesium acetate, 0.09M Sodium, Cacodylate pH 6.5, 27% MPD, 15% Glycerol

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