6THY
Botulinum neurotoxin A3 Hc domain in complex with GD1a
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-06 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.92 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.228, 73.129, 140.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.090 - 1.750 |
Rwork | 0.178 |
R-free | 0.21290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6f0o |
RMSD bond length | 0.011 |
RMSD bond angle | 1.654 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 140.180 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.217 | 2.990 |
Rpim | 0.060 | 0.910 |
Number of reflections | 47739 | 2570 |
<I/σ(I)> | 11.2 | 1.5 |
Completeness [%] | 99.8 | 100 |
Redundancy | 26.1 | 22.5 |
CC(1/2) | 0.996 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 289.15 | 0.1 M Sodium acetate, 22% v/v PEG Smear broad (4.55% v/v PEG 400, 4.55% v/v PEG 500 MME, 4.55% v/v PEG 600, 4.55% w/v PEG 1000, 4.55% w/v PEG 2000, 4.55% w/v PEG 3350, 4.55% w/v PEG 4000, 4.55% w/v PEG 5000 MME, 4.55% w/v PEG 6000, 4.55% w/v PEG 8000, 4.55% w/v PEG 10000) |