6THH
Crystal structure of type I-D CRISPR-Cas nuclease Cas10d in complex with the SIRV3 AcrID1 (gp02) anti-CRISPR protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 157.990, 157.990, 130.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.542 - 3.480 |
R-factor | 0.2379 |
Rwork | 0.236 |
R-free | 0.25380 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.542 | 3.600 |
High resolution limit [Å] | 3.480 | 3.480 |
Rmerge | 0.060 | 0.680 |
Number of reflections | 21713 | 2139 |
<I/σ(I)> | 11.9 | 1.2 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 2 | 2 |
CC(1/2) | 0.990 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 292 | 0.1 M Hepes 7.5, 2% (w/v) PEG 8000, 5% ethylene glycol |