6TE2
Crystal structure of human protein kinase CK2alpha' (CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor 17
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-15 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 |
Unit cell lengths | 46.339, 47.493, 50.357 |
Unit cell angles | 66.81, 89.92, 88.97 |
Refinement procedure
Resolution | 32.070 - 0.922 |
R-factor | 0.1278 |
Rwork | 0.128 |
R-free | 0.14630 |
Structure solution method | AB INITIO PHASING |
RMSD bond length | 0.017 |
RMSD bond angle | 1.400 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | Arcimboldo |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.074 | 0.976 |
High resolution limit [Å] | 0.922 | 0.922 |
Rmerge | 0.036 | 0.927 |
Rmeas | 0.042 | 1.079 |
Rpim | 0.021 | 0.550 |
Number of reflections | 206560 | 10328 |
<I/σ(I)> | 14.9 | 1.4 |
Completeness [%] | 76.0 | 24.5 |
Redundancy | 3.7 | 3.7 |
CC(1/2) | 0.999 | 0.541 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | Reservoir composition: 28 % (w/v) PEG6000, 0.9 M LiCl, 0.1 M, Tris/HCl, pH 8.5; drop composition prior to equilibration: 0.01 ml reservoir solution + 0.02 ml CK2alpja' (mutant Cys336Ser) /inhibitor MB002 mixture (0.180 ml 6 mg/ml CK2alpha-'Cys336Ser, 0.5 M NaCl, 25 mM Tris/HCl, pH 8.5, mixed and pre-equilibrated with 0.02 ml 10 mM MB002 in dimethyl sulfoxide); the initial inhibitor MB002 was replaced by the 2-aminothiazole-type inhibitor 17 by extensive crystal soaking. |