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6TE2

Crystal structure of human protein kinase CK2alpha' (CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor 17

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-15
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.9184
Spacegroup nameP 1
Unit cell lengths46.339, 47.493, 50.357
Unit cell angles66.81, 89.92, 88.97
Refinement procedure
Resolution32.070 - 0.922
R-factor0.1278
Rwork0.128
R-free0.14630
Structure solution methodAB INITIO PHASING
RMSD bond length0.017
RMSD bond angle1.400
Data reduction softwareXDS
Data scaling softwareautoPROC
Phasing softwareArcimboldo
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]32.0740.976
High resolution limit [Å]0.9220.922
Rmerge0.0360.927
Rmeas0.0421.079
Rpim0.0210.550
Number of reflections20656010328
<I/σ(I)>14.91.4
Completeness [%]76.024.5
Redundancy3.73.7
CC(1/2)0.9990.541
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293Reservoir composition: 28 % (w/v) PEG6000, 0.9 M LiCl, 0.1 M, Tris/HCl, pH 8.5; drop composition prior to equilibration: 0.01 ml reservoir solution + 0.02 ml CK2alpja' (mutant Cys336Ser) /inhibitor MB002 mixture (0.180 ml 6 mg/ml CK2alpha-'Cys336Ser, 0.5 M NaCl, 25 mM Tris/HCl, pH 8.5, mixed and pre-equilibrated with 0.02 ml 10 mM MB002 in dimethyl sulfoxide); the initial inhibitor MB002 was replaced by the 2-aminothiazole-type inhibitor 17 by extensive crystal soaking.

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