6TCM
Crystal structure of the omalizumab Fab - crystal form I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-03-18 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.375, 73.555, 141.099 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.224 - 1.850 |
R-factor | 0.1688 |
Rwork | 0.168 |
R-free | 0.19030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fjf |
RMSD bond length | 0.014 |
RMSD bond angle | 1.334 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.380 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.192 | 2.641 |
Rpim | 0.078 | 1.101 |
Number of reflections | 58932 | 3588 |
<I/σ(I)> | 4.3 | 1.7 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.2 | 6.9 |
CC(1/2) | 0.990 | 0.413 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 0.085M Tris pH8.5, 42.5% MPD, 15% glycerol and 0.17M ammonium phosphate |