6TBC
Crystal structure of S. aureus FabI in complex with NADPH and kalimantacin B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.316, 108.564, 296.183 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.640 - 2.550 |
R-factor | 0.1927 |
Rwork | 0.190 |
R-free | 0.23700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6tbb |
RMSD bond length | 0.006 |
RMSD bond angle | 1.555 |
Data reduction software | XDS (Jan 26, 2018) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.640 | 29.620 | 2.610 |
High resolution limit [Å] | 2.550 | 11.960 | 2.550 |
Rmerge | 0.091 | 0.046 | 4.806 |
Rmeas | 0.094 | 0.048 | 4.994 |
Rpim | 0.026 | 0.014 | 1.351 |
Total number of observations | 8020 | 61717 | |
Number of reflections | 68812 | 737 | 4564 |
<I/σ(I)> | 14.6 | 45.7 | 0.6 |
Completeness [%] | 99.9 | 93.8 | 100 |
Redundancy | 13.3 | 10.9 | 13.5 |
CC(1/2) | 0.999 | 0.999 | 0.327 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295.15 | 0.2 M NaCl, 0.1 M Na/K phosphate pH 6.2, 20% (w/v) PEG 1000 |