6T6N
Crystal structure of Klebsiella pneumoniae FabG2(NADH-dependent) in complex with NADH at 2.5 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | F 2 2 2 |
Unit cell lengths | 161.109, 255.316, 262.312 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.500 |
R-factor | 0.1927 |
Rwork | 0.192 |
R-free | 0.21060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jro |
RMSD bond length | 0.010 |
RMSD bond angle | 1.478 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.960 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.075 | 0.606 |
Rmeas | 0.096 | 0.779 |
Rpim | 0.044 | 0.369 |
Number of reflections | 92045 | 4546 |
<I/σ(I)> | 10.2 | 2.1 |
Completeness [%] | 99.3 | 99.5 |
Redundancy | 4.3 | 4.4 |
CC(1/2) | 0.997 | 0.739 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 297 | 20 % PEG3350 0.2 M Na malonate pH 6.0 12.5 mM NADH added to the protein solution prior to drop mixing |