6T53
Thrombin in Complex with a D-Phe-Pro-p-benzylamine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 70.167, 71.412, 72.475 |
Unit cell angles | 90.00, 100.57, 90.00 |
Refinement procedure
Resolution | 38.410 - 1.350 |
R-factor | 0.1305 |
Rwork | 0.129 |
R-free | 0.15060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ue7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.018 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.493 | 1.430 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmeas | 0.063 | 0.614 |
Number of reflections | 75527 | 12186 |
<I/σ(I)> | 13.25 | 2.3 |
Completeness [%] | 98.0 | |
Redundancy | 3.05 | |
CC(1/2) | 0.999 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 20 mM NaH2PO4, 350 mM NaCl, 27% (w/v) PEG8000 |