6T46
Structure of the Rap conjugation gene regulator of the plasmid pLS20 in complex with the Phr* peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.12712 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 116.670, 93.282, 167.687 |
Unit cell angles | 90.00, 94.97, 90.00 |
Refinement procedure
Resolution | 45.424 - 2.450 |
R-factor | 0.2051 |
Rwork | 0.202 |
R-free | 0.26210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6t3h |
RMSD bond length | 0.011 |
RMSD bond angle | 1.612 |
Data reduction software | XDS (Jun 1, 2017) |
Data scaling software | autoPROC (1.0.5) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.424 | 45.424 | 2.492 |
High resolution limit [Å] | 2.450 | 6.643 | 2.450 |
Rmerge | 0.039 | 0.018 | 0.788 |
Rmeas | 0.053 | 0.023 | 1.074 |
Rpim | 0.037 | 0.016 | 0.759 |
Number of reflections | 44873 | 6950 | 94 |
<I/σ(I)> | 14 | 1.3 | |
Completeness [%] | 95.9 | 96.4 | 2.8 |
Redundancy | 2.2 | 2.1 | 3.2 |
CC(1/2) | 0.995 | 0.993 | 0.622 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.8 | 290 | 2.5% PEG8K, 8% Etilenglicol, 0.1M MES pH6.8, Rap 10mg/mL, 1:5 RAP:Phr (QKGMY) |