6T3S
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979500 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.890, 95.240, 227.896 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.890 - 3.280 |
R-factor | 0.1983 |
Rwork | 0.197 |
R-free | 0.22960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fax |
RMSD bond length | 0.008 |
RMSD bond angle | 1.792 |
Data reduction software | XDS (VERSION March 30, 2013) |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.5.5) |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.893 | 48.893 | 3.460 |
High resolution limit [Å] | 3.279 | 10.370 | 3.280 |
Rmerge | 0.033 | 0.995 | |
Rmeas | 0.089 | 0.041 | 1.197 |
Rpim | 0.035 | 0.018 | 0.467 |
Total number of observations | 201533 | 5974 | 28777 |
Number of reflections | 30804 | 1079 | 4434 |
<I/σ(I)> | 15.8 | 42.3 | 2.5 |
Completeness [%] | 99.9 | 98.1 | 99.8 |
Redundancy | 6.5 | 5.5 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM sodium chloride, 4% PEG 8000 |