6T3N
Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-14 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979180 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.895, 95.271, 217.844 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.150 - 3.220 |
R-factor | 0.1849 |
Rwork | 0.182 |
R-free | 0.24180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3igi |
RMSD bond length | 0.009 |
RMSD bond angle | 1.958 |
Data reduction software | XDS (VERSION March 30, 2013) |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.150 | 32.150 | 3.390 |
High resolution limit [Å] | 3.219 | 10.180 | 3.220 |
Rmerge | 0.038 | 0.542 | |
Rmeas | 0.089 | 0.051 | 0.695 |
Rpim | 0.039 | 0.025 | 0.302 |
Total number of observations | 147818 | 2756 | 22187 |
Number of reflections | 30536 | 698 | 4451 |
<I/σ(I)> | 14.5 | 32.4 | 2.4 |
Completeness [%] | 98.6 | 65.3 | 99.7 |
Redundancy | 4.8 | 3.9 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM sodium chloride, 4% PEG 8000 |