6T3K
Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 88.659, 95.453, 224.978 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.460 - 3.440 |
R-factor | 0.2117 |
Rwork | 0.209 |
R-free | 0.25710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4far |
RMSD bond length | 0.009 |
RMSD bond angle | 1.894 |
Data reduction software | XDS (VERSION March 30, 2013) |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.460 | 48.458 | 3.630 |
High resolution limit [Å] | 3.440 | 10.880 | 3.440 |
Rmerge | 0.015 | 1.508 | |
Rmeas | 0.081 | 0.021 | |
Rpim | 0.044 | 0.011 | 0.862 |
Number of reflections | 24334 | 775 | 3528 |
<I/σ(I)> | 17 | 30.6 | 0.4 |
Completeness [%] | 94.1 | 87.3 | 95 |
Redundancy | 3.3 | 3.2 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 303 | 50 mM Na-HEPES pH 7.0, 100 mM magnesium acetate, 150 mM potassium chloride, 10 mM lithium chloride, 4% PEG 8000 |