6T3D
Crystal structure of AmpC from E.coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-16 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 43 3 2 |
Unit cell lengths | 139.180, 139.180, 139.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.208 - 1.500 |
R-factor | 0.1594 |
Rwork | 0.158 |
R-free | 0.17760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1iem |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.15.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.210 | 49.210 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.104 | 0.041 | 6.300 |
Rmeas | 0.104 | 0.042 | 6.341 |
Rpim | 0.012 | 0.005 | 0.719 |
Total number of observations | 5658052 | 59660 | 416213 |
Number of reflections | 73865 | 988 | 5399 |
<I/σ(I)> | 29.3 | 91.6 | 1.2 |
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 76.6 | 60.4 | 77.1 |
CC(1/2) | 1.000 | 1.000 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 25% w/v PEG6000, 0.01 M ZnCl2, 0.1 M MES pH = 6.0 |