6T1J
Crystal structure of MLLT1 (ENL) YEATS domain in complexed with piperazine-urea derivative 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 49.152, 49.152, 131.009 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.020 - 1.970 |
R-factor | 0.226 |
Rwork | 0.224 |
R-free | 0.27470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hq0 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.194 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.150 | 49.150 | 2.040 |
High resolution limit [Å] | 1.970 | 7.630 | 1.970 |
Rmerge | 0.104 | 0.069 | 0.768 |
Rmeas | 0.111 | 0.074 | 0.852 |
Rpim | 0.034 | 0.025 | 0.282 |
Number of reflections | 12088 | 278 | 1139 |
<I/σ(I)> | 9 | 2.1 | |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 9.5 | 8.1 | 8.8 |
CC(1/2) | 0.997 | 0.995 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 25% PEG 3350, 0.2M sodium chloride, 0.1M bis-tris pH 6.5 |