Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6T09

Crystal structure of YTHDC1 with fragment 24 (PSI_DC1_003)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-12
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths39.668, 103.261, 42.138
Unit cell angles90.00, 105.56, 90.00
Refinement procedure
Resolution40.590 - 1.750
R-factor0.1899
Rwork0.188
R-free0.22500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4r3h
RMSD bond length0.006
RMSD bond angle0.879
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.6001.860
High resolution limit [Å]1.7501.750
Number of reflections617129458
<I/σ(I)>8.8
Completeness [%]94.8
Redundancy1.75
CC(1/2)0.9970.438
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29525% PEG3350, 0.2M Ammonium Sulphate, 0.1M bis-tris, pH 6.5

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon