6SVJ
Terahertz irradiated structure of bovine trypsin (odd frames of crystal x42)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-23 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.8856 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.910, 57.150, 65.700 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.120 - 1.160 |
Rwork | 0.150 |
R-free | 0.19223 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 418G |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.120 | 43.120 | 1.190 |
High resolution limit [Å] | 1.160 | 5.180 | 1.160 |
Rmerge | 0.102 | 0.042 | 0.776 |
Rmeas | 0.119 | 0.049 | 1.020 |
Total number of observations | 461067 | ||
Number of reflections | 129370 | 1515 | 4388 |
<I/σ(I)> | 7.91 | 24.59 | 0.84 |
Completeness [%] | 94.6 | 99.1 | 43.2 |
Redundancy | 3.564 | 3.68 | 1.66 |
CC(1/2) | 0.997 | 0.998 | 0.317 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | protein solution - 60 mg/ml trypsin, 6 mg/ml benzamidine and 3 mM CaCl2 in a 30 mM HEPES buffer pH 7.0. Well solution - 18% PEG 8000, 200 mM (NH4)2SO4, 50 mM HEPES pH 7, 3 mM CaCl2 and 6 mg/ml benzamidine. 1:1 ratio drops |