6SS9
Human Leukocyte Antigen Class I A02 Carrying LLWNGPMHV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-14 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 199.751, 48.261, 117.754 |
Unit cell angles | 90.00, 123.47, 90.00 |
Refinement procedure
Resolution | 29.430 - 2.700 |
R-factor | 0.2362 |
Rwork | 0.233 |
R-free | 0.30100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5n6b |
RMSD bond length | 0.013 |
RMSD bond angle | 1.691 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.430 | 29.410 | 2.590 |
High resolution limit [Å] | 2.520 | 11.290 | 2.520 |
Rmerge | 0.077 | 0.057 | 0.686 |
Rmeas | 0.091 | 0.068 | 0.798 |
Rpim | 0.047 | 0.036 | 0.403 |
Total number of observations | 1059 | 7831 | |
Number of reflections | 31568 | 359 | 2105 |
<I/σ(I)> | 9.6 | 19.8 | 1.6 |
Completeness [%] | 98.6 | 88.6 | 89.6 |
Redundancy | 3.6 | 2.9 | 3.7 |
CC(1/2) | 0.996 | 0.989 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M Sodium Cacodylate pH 6.5, 0.2 M Ammonium Sulphate, 20 % PEG 4000 |