6SRU
Structure of Ig-like V-type domian of mouse Programmed cell death 1 ligand 1 (PD-L1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978631 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 73.920, 107.715, 79.531 |
Unit cell angles | 90.00, 99.15, 90.00 |
Refinement procedure
Resolution | 49.664 - 2.532 |
R-factor | 0.2302 |
Rwork | 0.228 |
R-free | 0.27910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c3t |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.664 | 2.620 |
High resolution limit [Å] | 2.530 | 2.530 |
Rmerge | 0.061 | 0.826 |
Number of reflections | 38622 | 3645 |
<I/σ(I)> | 10.8 | |
Completeness [%] | 94.1 | |
Redundancy | 2.6 | |
CC(1/2) | 0.998 | 0.567 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M ammonium sulfate, 0.1 M Tris pH 7.5, 20% PEG 5000 MME |