6SPT
High resolution crystal structure of N-terminal domain of PEX14 from Trypanosoma brucei in complex with the fist compound with sub-micromolar trypanocidal activity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 45.935, 45.935, 63.733 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.780 - 1.200 |
R-factor | 0.1106 |
Rwork | 0.108 |
R-free | 0.15240 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.028 |
RMSD bond angle | 2.670 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.780 | 39.780 | 1.300 |
High resolution limit [Å] | 1.200 | 20.000 | 1.200 |
Rmerge | 0.072 | 0.034 | 0.291 |
Rmeas | 0.082 | 0.040 | 0.345 |
Total number of observations | 91713 | ||
Number of reflections | 23334 | 6 | 4499 |
<I/σ(I)> | 9.42 | 17.59 | 2.97 |
Completeness [%] | 93.7 | 75 | 86.3 |
Redundancy | 3.93 | 2.167 | 3.367 |
CC(1/2) | 0.996 | 1.000 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2M MgCl2, 0.1 M Tris pH 8, 20% (w/v) PEG 6000 |