6SLR
Structure of saposin B in complex with atovaquone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-24 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.873 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 75.707, 75.707, 95.475 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.620 - 2.380 |
R-factor | 0.2349 |
Rwork | 0.233 |
R-free | 0.27770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4v2o |
RMSD bond length | 0.007 |
RMSD bond angle | 1.343 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.620 | 38.600 | 2.180 |
High resolution limit [Å] | 1.910 | 6.455 | 1.927 |
Rmerge | 0.057 | 0.028 | 0.416 |
Rmeas | 0.063 | 0.031 | 0.523 |
Rpim | 0.025 | 0.013 | 0.312 |
Number of reflections | 14331 | 717 | 718 |
<I/σ(I)> | 15.8 | ||
Completeness [%] | 91.8 | 98.8 | 71.1 |
Redundancy | 5.7 | 5.6 | 2.4 |
CC(1/2) | 0.999 | 0.999 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M MES, 30% PEG6000 |