6SFK
Crystal structure of p38 alpha in complex with compound 81 (MCP42)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-26 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.689, 76.250, 78.530 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.400 - 1.800 |
R-factor | 0.1825 |
Rwork | 0.181 |
R-free | 0.21840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.013 |
RMSD bond angle | 1.484 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.400 | 50.390 | 1.860 |
High resolution limit [Å] | 1.800 | 6.970 | 1.800 |
Rmerge | 0.059 | 0.031 | 0.748 |
Rmeas | 0.063 | 0.033 | 0.889 |
Rpim | 0.026 | 0.013 | 0.338 |
Number of reflections | 37064 | 737 | 3578 |
<I/σ(I)> | 14.2 | 2.4 | |
Completeness [%] | 99.6 | 99.4 | 99.6 |
Redundancy | 6.7 | 6.8 | 6.3 |
CC(1/2) | 0.999 | 0.998 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 277.15 | 17.5% MMW PEG smears, 0.1M MES pH 6.0 |