6S96
Crystal structure of the catalytic domain of UBE2S C118A.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 61 |
Unit cell lengths | 120.927, 120.927, 45.344 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.910 - 2.180 |
R-factor | 0.2059 |
Rwork | 0.204 |
R-free | 0.24610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zdn |
RMSD bond length | 0.014 |
RMSD bond angle | 1.206 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.910 | 2.258 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.044 | 0.408 |
Rmeas | 0.062 | 0.577 |
Rpim | 0.044 | 0.408 |
Number of reflections | 19810 | 1898 |
<I/σ(I)> | 8.58 | 1.54 |
Completeness [%] | 98.8 | 95.14 |
Redundancy | 2 | 2 |
CC(1/2) | 0.997 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 293.15 | 2.5 M potassium formate, 0.1 M sodium cacodylate |